Timeline


and .

10/09/09:

15:24 Ticket #1446 (No result defined for action org.topazproject.ambra. ...) closed by zmclaughlin
Verified that  http://plosone-demo.plos.org/static/zoe.action?request=33
15:09 Ticket #1474 (CODE_ARTICLE_TITLE error on four articles) closed by zmclaughlin
14:37 Ticket #1480 (The PLoS Reports drop downs do not include the updated data that is now ...) closed by zmclaughlin
14:14 Ticket #1480 (The PLoS Reports drop downs do not include the updated data that is now ...) created by zmclaughlin
There is more data available than is being made available through PLoS …
14:02 Ticket #1479 (PLoS Reports tables with data that contains large numbers overlaps the ...) created by zmclaughlin
Go to:  http://plosreports-demo.plos.org/plosreports Select: User: …
13:54 Ticket #1478 (PLoS Reports - There is an extra option in the Journal Dropdown 'PLoS ...) closed by zmclaughlin
the drop down 'PLoS Journals' was removed.
13:05 Changeset [7908] by dragisak
Handle situation when Article.publisher field is null.
13:00 Ticket #1477 (The antibodies online ad is not showing up in the top left hand banner ad ...) closed by zmclaughlin
12:26 Ticket #1478 (PLoS Reports - There is an extra option in the Journal Dropdown 'PLoS ...) reopened by russ
12:17 Ticket #1478 (PLoS Reports - There is an extra option in the Journal Dropdown 'PLoS ...) created by zmclaughlin
The PLoS Journals listing does not appear to have much data associated …
12:14 Ticket #1158 (IE6 - Advanced search form date range calendar position is wrong) closed by zmclaughlin
12:13 Ticket #1158 (IE6 - Advanced search form date range calendar position is wrong) reopened by stoomey
12:12 Ticket #1158 (IE6 - Advanced search form date range calendar position is wrong) reopened by stoomey
12:00 Changeset [7907] by stoomey
Revised correctons.js to use a span inside of correction list items …
10:58 Ticket #515 (develop a proper way to include freemarker templates on a per virtual ...) closed by npeterson
10:51 Ticket #1450 (On articles that we should be suppressing Counter metrics for (those ...) closed by zmclaughlin
Data is now displaying for all articles.
10:50 Ticket #1442 (Custom Google Scholar XSL) closed by npeterson
10:12 Ticket #1463 (Using IE 8 the metrics graph is pushed down on the page) closed by zmclaughlin
09:57 Ticket #1471 (Rendering issue on I.E. 6 caused by code on every page <?xml version="1.0" ...) closed by zmclaughlin
Tested on I.E. 6.0 and the issue has been resolved.
09:14 Ticket #1475 (Journal information is no longer displaying below the article titles in ...) closed by zmclaughlin
Also cannot reproduce. Verifying.
08:47 Ticket #1463 (Using IE 8 the metrics graph is pushed down on the page) reopened by zmclaughlin
Tested again on i.e. 8. On initial view the graph came up fine. I …

10/08/09:

16:57 Changeset [7906] by dragisak
Upgrade to Mulgara 2.1.4
16:37 Ticket #1477 (The antibodies online ad is not showing up in the top left hand banner ad ...) created by zmclaughlin
The antibodies online ad displayed in the top left hand banner ad is not …
16:16 Changeset [7905] by dragisak
Nullable property in view will cause whole entity object to not got loaded …
13:01 Ticket #1444 (templates from other journal contexts are displayed if ...) closed by zmclaughlin
12:17 Changeset [7904] by josowski
The private class TemplateKey? didn't handle nulls well. It shouldn't ever …
10:20 Ticket #1019 (note range select bug in firefox 3.0) closed by zmclaughlin
Checked on FF3.0.6 on Windows XP Checked on 3.0.14 on Linux both look …
10:09 Ticket #1476 (Ambra not returning 404 on invalid static pages) created by josowski
When a request is made for a URL in the "/static" namespace that does not …
10:06 Changeset [7903] by josowski
Switching the static/NoOpAction namespace to use the minimal stack of …
09:37 Ticket #1475 (Journal information is no longer displaying below the article titles in ...) created by zmclaughlin
If you go to the new collections page: …
09:25 Ticket #1474 (CODE_ARTICLE_TITLE error on four articles) created by zmclaughlin
From Web Production: On demo, these articles ingested with …
09:08 Ticket #1019 (note range select bug in firefox 3.0) reopened by zmclaughlin
Is the note supposed to have that little white area to the right of it? …

10/07/09:

16:31 Ticket #1446 (No result defined for action org.topazproject.ambra. ...) reopened by zmclaughlin
16:01 Ticket #1469 (Remove links from journal names in collection issue ToC) closed by zmclaughlin
Verified.
16:01 Ticket #1460 (Collections) closed by zmclaughlin
Verified. The publication info appears below the article: Example: …
15:55 Ticket #1473 (When elevating a note to a correction, sometimes the object cache object ...) created by zmclaughlin
When elevating a note to a correction, sometimes the object cache object …
15:47 Ticket #1446 (No result defined for action org.topazproject.ambra. ...) reopened by zmclaughlin
Checked using  http://www.plosone.org/static/zoe.action?request=33 but …
15:14 Ticket #1468 (RHC menu link to the collection has the wrong label) closed by zmclaughlin
extra xml will be removed by web production. Verified and issue has been …
14:14 Changeset [7902] by dragisak
Remove unnecessary XML declaration that is causing browser problems.
13:46 Ticket #1463 (Using IE 8 the metrics graph is pushed down on the page) reopened by zmclaughlin
13:22 Ticket #1466 (NPE in admin panel) closed by zmclaughlin
12:20 Ticket #1472 (Admin Panel Delete and reingestion of articles not behaving correctly - ...) created by zmclaughlin
If an article is deleted the listing still appears in the browse by …
11:42 Ticket #1015 (include issn in extended feed) closed by npeterson
11:41 Ticket #1009 (add PMC article-type to extended feed) closed by npeterson
11:38 Ticket #981 ('see all ratings' needs paging) closed by npeterson
11:35 Ticket #940 (Verify that ambra-theme is up to date and also only maintain copies of ...) closed by npeterson
11:21 Ticket #1471 (Rendering issue on I.E. 6 caused by code on every page <?xml version="1.0" ...) created by zmclaughlin
This: <?xml version="1.0" encoding="UTF-8"?> appears at the top of every …
09:20 Ticket #1470 (Package Ambra into a single VMWare Virtual Appliance) created by rcave
Package Ambra/Topaz into a single VMWare virtual appliance with some …

10/06/09:

16:32 Changeset [7901] by dragisak
RDFa: add dc:description information to article page.
16:14 Ticket #1469 (Remove links from journal names in collection issue ToC) created by zmclaughlin
 http://ploscollections-demo.plos.org/article/browseIssue.action?issue=info% …
16:03 Ticket #1468 (RHC menu link to the collection has the wrong label) created by zmclaughlin
 http://ploscollections-demo.plos.org/article/info%3Adoi%2F10.1371%2Fjournal
16:00 Changeset [7900] by dragisak
RDFa: add dc:subject information to article page.
13:44 Changeset [7899] by wtoconnor
Added check for null objects before they are used. Addresses #1466
12:52 Changeset [7898] by stoomey
Added property overflow:hidden to both .loadingCycler and .loadingCycler …
09:39 Ticket #1467 (Backspacing over an Author name in advanced search rather than using the ...) created by zmclaughlin
When I deleted an author name from the list by backspacing the search ran …
08:25 Ticket #1465 (The message on the article that says "Published in the September 2008 ...) closed by zmclaughlin
Verified. The year is now displaying on the link to the journal archive.

10/05/09:

16:22 Ticket #1466 (NPE in admin panel) created by npeterson
 http://ploscollections-demo.plos.org/admin/adminTop.action Errors …
15:31 Changeset [7897] by josowski
I created a new interceptor stack for struts actions that don't really …
13:02 Ticket #1465 (The message on the article that says "Published in the September 2008 ...) created by zmclaughlin
Compare: …
12:13 Changeset [7896] by josowski
Upgrading Dojo to 1.3.2 Dojo 1.3.2 includes a number of fixes for IE8, …
12:01 Ticket #1464 (If a complex advanced search is edited and made even more complex and run ...) created by zmclaughlin
Example search: […] Error: Bad Request Your browser sent a request …
11:34 Ticket #1449 (Error in article feed for categories with single quotes (character escape ...) closed by zmclaughlin
Verified Did a comparison of Demo vs Stage (because production redirects …
10:09 Ticket #1461 (Setting the browser language to French (and possibly other languages) will ...) closed by zmclaughlin
Verified on Demo - issue is fixed
09:32 Ticket #1463 (Using IE 8 the metrics graph is pushed down on the page) created by zmclaughlin
Using I.E 8 on Windows XP (and reported on Windows Vista) the metric graph …
08:41 Ticket #1453 (Javascript does not complete when alm is unavailable) closed by zmclaughlin

10/02/09:

13:58 Ticket #1462 (ambra init script fails to stop ambra) created by russ
howdy! when i run /etc/init.d/ambra stop on branch, i get a bash error …
09:56 Changeset [7895] by dragisak
Make sure we check for updated Topaz snapshots in every build (default is …

10/01/09:

16:40 Ticket #539 (Journal definition via a XML file.) closed by npeterson
13:55 Changeset [7894] by josowski
This forces our freemarker templates to run under the "en_US" locale. …
11:24 Changeset [7893] by josowski
Moving the template cache config settings to the …
11:22 Changeset [7892] by josowski
Moving the template cache config settings to the …
11:21 Ticket #516 (update XSL file to 2.0) closed by npeterson
10:44 Ticket #502 (Add references (cited articles etc.) to the article feed data) closed by npeterson
10:32 Ticket #159 (xmlns(x=foo) is broken in xpointer lib) closed by npeterson

09/30/09:

18:04 Changeset [7891] by josowski
The cache_storage option has been moved to the ambra configuration xml …
18:01 Changeset [7890] by josowski
By default the freemarker cache stores templates using just their filename …
14:30 Ticket #1461 (Setting the browser language to French (and possibly other languages) will ...) created by zmclaughlin
If you set the browser language to French On Firefox go to >Edit …

09/29/09:

14:59 Changeset [7889] by josowski
Implementation of the collection journal list feature in the UI. …
14:50 Ticket #1460 (Collections) created by josowski
Articles that have been cross published should have a listing of journal …
12:24 Changeset [7888] by josowski
Adding parameter to the browseService bean to avoid Intellij warnings
12:04 Ticket #1094 (mulgara doesn't start on boot) reopened by rcave
11:59 Ticket #1350 (COUNTER Data Migration and Data Collection System) closed by rcave
11:58 Ticket #1094 (mulgara doesn't start on boot) closed by rcave
11:51 Ticket #1114 (Upgrade Groovy to 1.5.8 (when available)) closed by rcave
11:45 Ticket #1260 (Multiple Scopus Citations in Cited By Links) closed by rcave
10:48 Ticket #1459 (error page for dx.plos.org is branded PLoS ONE but should be ...) created by zmclaughlin
If you are using the dx.plos.org resolver (which is used by PMC, PubMed?, …

09/28/09:

16:52 Changeset [7887] by josowski
Renaming a function to improve code readability
10:43 Changeset [7886] by dragisak
Upgrade to Mulgara 2.1.4-SNAPSHOT

09/25/09:

16:34 Changeset [7885] by josowski
Strings were not being escaped when being passed in as search parameters …
12:26 Ticket #1458 (query string is preserved when clicking links in admin panel) created by russ
so, let's say i need to delete a cache key, with a URL like: […] …
11:20 Ticket #1457 (MED & BIO journals have large number of broken links in the journal ...) created by zmclaughlin
Example Medicine - Dec 2008 - …
10:27 Changeset [7884] by dragisak
Fix quote characters.
10:18 Changeset [7883] by dragisak
Add DOI namespace to common header.
08:58 Ticket #1443 ("without the words" option in advanced search does not affect search ...) closed by zmclaughlin
Made a mistake in opening bug.

09/24/09:

17:59 Ticket #1417 (unfamiliar ingest errors for pone.0006676.zip) closed by russ
15:58 Ticket #1456 (Search is inconsistent when searching strings with symbols) created by zmclaughlin
Use simple search to search for two different article titles without any …
15:22 Ticket #1455 (Several fields in Research Article (including abstract) are not searchable) created by zmclaughlin
Research article journal.pmed.1000047 used as an example: …
13:54 Ticket #1454 (Bug: DNA sequence not wrapping within margins of the paragraph.) created by zmclaughlin
 http://plosone-stage.plos.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0
13:24 Ticket #1453 (Javascript does not complete when alm is unavailable) created by zmclaughlin
ALM system is down i/o error in the javascript because of the timeout. …
12:04 Changeset [7882] by dragisak
RDFa: change dc:identifier and dc:publisher * dc:identifier is now URI to …

09/23/09:

12:51 Changeset [7881] by dragisak
Upgarde to Freemarker 2.3.15

09/22/09:

15:43 Ticket #1452 (Inline artitcle text sizing) created by josowski
There is a handy feature on this website that allows the end user to …
14:27 Changeset [7880] by dragisak
Add Dublin Core RDFa to article page. Included elements in every page: * …

09/21/09:

15:20 Ticket #1451 (Ambra memory leak) created by rcave
There's a memory leak in Ambra. Heap memory usage and the memory pool "PS …
14:46 Changeset [7879] by rcave
Updated the release notes to correct a feature list item.
11:28 Ticket #1450 (On articles that we should be suppressing Counter metrics for (those ...) created by zmclaughlin
Example: …

09/17/09:

16:16 Ticket #1449 (Error in article feed for categories with single quotes (character escape ...) created by rcave
Error occurs for categories with a single quote in the category: […]
08:42 Ticket #1448 (Invalid URI - duplicate article DOIs) created by rcave
There are a lot of the following errors in the log file. Given the …

09/16/09:

14:57 Changeset [7878] by russ
get as much plos-specific config as possible out of packages …
14:51 Ticket #1447 (annotation popup does not move if another annotation is clicked) created by russ
1. view an article with multiple note annotations 1. click on one note, …
13:07 Ticket #1446 (No result defined for action org.topazproject.ambra. ...) created by rcave
The code in struts.xml […] […]
11:54 Ticket #1445 (Doing an advanced search for a word and specify "In the abstract" for ...) created by zmclaughlin
Example: Go to:  http://plosmedicine-demo.plos.org Do an advanced search: …
11:45 Ticket #1444 (templates from other journal contexts are displayed if ...) created by russ
freemarker has a template cache - the HTML that templates compile into is …
10:29 Ticket #1443 ("without the words" option in advanced search does not affect search ...) created by zmclaughlin
Example search on:  http://plosmedicine-demo.plos.org ( thailand ) AND ( …
10:02 Changeset [7877] by dragisak
Save archive name during ingest to Article entity

09/15/09:

09:32 Changeset [7876] by josowski
Refactoring how we handle XSL style sheets a bit to make things a little …

09/14/09:

16:35 Ticket #1442 (Custom Google Scholar XSL) created by josowski
Create an action / XSL transformation that will return article XML with a …
15:23 Changeset [7875] by josowski
Correcting a simple cut and paste error.
14:47 Ticket #1421 (Branch for 0.9.3 to include XACML fix) closed by rcave
13:44 News edited by rcave
updated notes with the 0.9.4 release (diff)
13:39 Changeset [7874] by rcave
Updated the release notes with some minor spelling corrections.
13:27 Changeset [7873] by rcave
Updated the release notes with features implemented and bugs fixed in …

09/11/09:

14:19 Changeset [7872] by dragisak
[maven-release-plugin] prepare for next development iteration
14:19 Changeset [7871] by dragisak
[maven-release-plugin] copy for tag journal-publishing-system-0.9.4.1
14:19 Changeset [7870] by dragisak
[maven-release-plugin] prepare release journal-publishing-system-0.9.4.1
14:19 Milestone 0.9.4_rc1 completed
12:59 Changeset [7869] by dragisak
Upgrade Topaz version to 0.9.4 to avoid conflicts with version of Topaz …
12:53 Changeset [7868] by dragisak
Add dependency on mulgara-service that is needed if you run mulgara-start …

09/10/09:

16:46 Ticket #1423 (prepare-sip NullPointerException) closed by npeterson
15:51 Ticket #1426 (prepare-sip NullPointerException on image articles) closed by npeterson
15:02 Changeset [7867] by dragisak
Upgrade TestNG to version 5.10
15:01 Changeset [7866] by dragisak
Update dead module to current project version
14:22 Changeset [7865] by dragisak
[maven-release-plugin] prepare for next development iteration
14:22 Changeset [7864] by dragisak
[maven-release-plugin] copy for tag journal-publishing-system-0.9.4
14:22 Changeset [7863] by dragisak
[maven-release-plugin] prepare release journal-publishing-system-0.9.4
12:56 Changeset [7862] by dragisak
Upgrade Topaz dependency to release 0.9.3.1
09:17 Ticket #1441 (Download raw Metrics data as XML does not provide a consistent order to ...) created by zmclaughlin
The XML metric data does consistently order the data it provides so if …
08:44 Ticket #1439 (Articles published on PLos One between 12/20/2006 and 3/14/2007 should not ...) closed by zmclaughlin
08:33 Ticket #420 (site error page should return status 500, bad article DOI should return ...) closed by zmclaughlin

09/09/09:

12:48 Ticket #1440 (Pubmed data is not displaying on Metrics page under Citations) closed by zmclaughlin
12:28 Ticket #420 (site error page should return status 500, bad article DOI should return ...) reopened by ssterling
Please verify that the trackback URL is now bold text (and not a link). …
12:14 Changeset [7861] by ssterling
Changed the trackback URL from a link to just bold text. Addresses #420
10:52 Ticket #420 (site error page should return status 500, bad article DOI should return ...) closed by zmclaughlin
<response> <error>1</error> <message>HTTP method must be POST</message> …
10:43 Ticket #1422 (JVM Crashes during cachePrime) closed by npeterson
10:26 Ticket #1440 (Pubmed data is not displaying on Metrics page under Citations) created by zmclaughlin
Example: …
08:56 Ticket #420 (site error page should return status 500, bad article DOI should return ...) reopened by zmclaughlin
I checked this …
08:46 Ticket #1439 (Articles published on PLos One between 12/20/2006 and 3/14/2007 should not ...) reopened by zmclaughlin
March 14, 2007 articles are still showing data. Checked with Peter …
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