Timeline


and .

03/24/09:

17:20 Ticket #1215 (Move addArticle and removeArticle methods into a service class) closed by rcave
fixed: Verified that cross published articles do not delete current articles when …
17:10 Ticket #1163 (Expression thisPage is undefined on first view of article) closed by rcave
worksforme: Closing ticket as we can't reproduce. It may have been fixed by previous …
17:05 Ticket #1196 (manage virtual journals set current issue) closed by rcave
wontfix: Verified that the label is pulling the current issue name and current …
17:03 Ticket #1228 (Adding a new Issue to an existing Volume removes all Articles for all ...) closed by rcave
fixed: Verified that adding a new issue to an existing volume does not affect …
17:02 Ticket #1211 (Admin Panel - Unable to Manually Order Articles) closed by rcave
fixed: Verified that articles can be manually re-ordered. Verified that an …
17:01 Ticket #1218 (Manage Issues - Can't reorder more than 12 issues) closed by rcave
fixed: Verified that more than 12 issues can be re-ordered within a volume.
16:58 Ticket #1201 (Re-order Issue removes all articles from that issue) closed by rcave
fixed: Verified that the list of articles is not removed when issues are …
16:33 Ticket #1198 (delete article needs to return package to the ingestion-queue) closed by rcave
fixed: Verified that an article zip file is returned to the ingestion-queue on …
16:08 Ticket #1217 (simpleSearch.action results display XML markup) closed by rcave
fixed: Verified that the XML markup has been removed from the simple search …
16:07 Ticket #1225 (Remove date range from advanced search) closed by rcave
fixed: Verified that the date range has been removed from the advanced search …
16:05 Ticket #1223 (Comment out all article type blurb icons) closed by rcave
wontfix: Changes have been made to the PLoS repository. Closing ticket as won't …
16:03 Ticket #1224 (Change "Related" tab text to "Related Content") closed by rcave
fixed: Verified that the tab text has been changed to "Related Content" for all …
14:53 Changeset [7548] by dragisak
Get methods in entities should not set fields. Because of lazy loading, …
14:13 Changeset [7547] by ssterling
Search Results Page: Remove XML tags from the example Strings shown to the …
14:11 Changeset [7546] by russ
removing ass, dong, and kock from the naughty word filter, due to their …
14:07 Changeset [7545] by wtoconnor
For various reasons an article URI can be in the issue article list and …
13:30 Changeset [7544] by josowski
Removing date functionality from PLoS templates References #1225, also …
13:07 Changeset [7543] by josowski
Rolled back r7542, we decided on doing this in a different manner
13:02 Ticket #1228 (Adding a new Issue to an existing Volume removes all Articles for all ...) created by npeterson
1) Log in to a Journal 2) Check some of the Volume/Issues/Articles and …
12:16 Ticket #1227 (r7512 adds absolute pathed URLs that don't work in a build) created by russ
r7512 adds info links, but uses absolute pathed URLs that only work in an …
12:14 Ticket #1226 (r7512 adds links that don't point to a valid destination) created by russ
r7512 added info links to article_related.ftl. the intended destination …
11:55 Changeset [7542] by josowski
Removing date functionality from PLoS templates References #1225
11:30 Changeset [7541] by russ
reverted r7538 - we decided that it made more sense to make this change in …
11:28 Ticket #1225 (Remove date range from advanced search) created by rcave
Mulgara is unable to quickly return search results for specified date …
11:27 Ticket #1172 (for automatically ordered issue, issue feed ordering is different from ...) closed by russ
fixed: yeah, i was on crack. this is verified.
10:57 Changeset [7540] by stoomey
Changed "Related" tab text to "Related Content" in all instances in …
10:43 Ticket #1224 (Change "Related" tab text to "Related Content") created by rcave
Change "Related" tab text to "Related Content" for all journals.
10:15 Changeset [7539] by josowski
Code formating and exception handling improvements.
09:42 Changeset [7538] by stoomey
Commented out article type blurb code. References #1223
07:34 Ticket #1223 (Comment out all article type blurb icons) created by rcave
The editorial team has decided to remove this functionality until the …
04:23 Ticket #1176 (Advanced Search - creator AND results incorrect) closed by ronald
fixed: (In [7537]) Fix overly aggressive optimization in r7266. The problem is …
04:23 Changeset [7537] by ronald
Fix overly aggressive optimization in r7266. The problem is if a field …
00:05 Ticket #1219 (Long URLS are not line breaking) closed by rcave
fixed: Verified that long URLs are truncated but still link correctly.
00:02 Ticket #1208 (Competing interests text automatically placed on old comments) closed by rcave
fixed: Verified that the comments made before the cisStartDate do not display the …

03/23/09:

23:56 Ticket #1220 (Medicine displays wrong tagline in window title.) closed by rcave
fixed: Verified that the tagline "PLoS Medicine: A Peer-Reviewed Open-Access …
23:52 Ticket #1186 (CIS bolded lead-in) closed by rcave
fixed: Verified that the lead in text for the CIS appears in bold.
23:43 Ticket #1210 (Change Pubmed to PubMed on Related tab for an article) closed by rcave
fixed: Verified that text changes were made correctly.
23:41 Ticket #1171 (Should not be able to add a note annotation to Abstract text) closed by rcave
fixed: Verified that a user cannot add an annotation to article headers.
23:37 Ticket #1206 (Update link in Rating instruction text) closed by rcave
fixed: Verified that the notes/comments guidelines point to …
23:32 Ticket #1204 (Related articles missing <italic>) closed by rcave
fixed: Verified that the related article links are displaying italics correctly.
23:29 Ticket #1205 (Update to 'Published In' block) closed by rcave
fixed: Verified that the journal name is appearing italicized and that the …
23:26 Ticket #1188 (Cross published articles need "Published in <journal>" text/link) closed by rcave
fixed: Verified that the text/link is appearing correctly when an article is …
18:01 Ticket #1092 (create admin user requires ambra restart to take effect) closed by russ
fixed
17:34 Ticket #1155 (Safari 3, Windows - annotations, corrections, retractions not displayed on ...) closed by rcave
wontfix: Verified that annotations, corrections, and retractions are displayed in …
17:20 Ticket #1181 (Digg not accepting article bookmarks) closed by rcave
fixed: Verified that the link is submitted to Digg without the …
16:43 Changeset [7536] by josowski
Fixing issue that would cause Competing interest to display even if there …
16:02 Changeset [7535] by josowski
This change will shorten all long URLS in annotations References #1219
15:35 Changeset [7534] by stoomey
Bolded the lead in text for CIS ("No competing interests declared." and …
14:56 Ticket #1165 (ONE template is displaying all the hidden elements.) closed by rcave
fixed: Verified that the elements are hidden on the ONE and CJ templates.
14:53 Changeset [7533] by josowski
Adding Italics to related articles links References #1204
14:22 Changeset [7532] by stoomey
Updated with correct element order. References #1188
14:17 Changeset [7531] by stoomey
Updated with correct element order. References #1188
13:59 Changeset [7530] by josowski
Removing duplicate code References #1188
13:48 Ticket #1222 (editAnnotation action doesn't work in edge case) created by russ
if the caches are empty and i go to …
13:47 Ticket #1152 (Issue add article broken) closed by wtoconnor
fixed
13:45 Ticket #1221 (adminTop annotation links don't respect journal context) created by russ
adminTop.action lists all flagged annotations, no matter what article the …
13:25 Changeset [7529] by josowski
It looks like some logic got lost for cross published articles in the …
13:12 Ticket #1220 (Medicine displays wrong tagline in window title.) created by stoomey
On Demo ( http://plosmedicine-demo:8080/home.action), Medicine pages are …
12:58 Changeset [7528] by stoomey
Minor update to CSS to properly space cancel and submit button on the …
12:11 Changeset [7527] by josowski
Older annotations and ratings now have the line "no competing interests …
11:51 Changeset [7526] by russ
add a test for given name before outputting.
11:32 Changeset [7525] by stoomey
Revised the link text and url variables to point to the correct pages …
11:02 Ticket #1219 (Long URLS are not line breaking) created by rcave
Long URLS are not line breaking in /annotation/listThread.action. See …
10:59 Ticket #1218 (Manage Issues - Can't reorder more than 12 issues) created by rcave
another infrequent use case that might come up in the future as we add …
10:45 Changeset [7524] by stoomey
Updated tags wrapping journal name to valid <em> instead of deprecated …
10:41 Changeset [7523] by rich
Text changes required for consistency. Changed "PubMed? Central" to …

03/22/09:

14:27 Ticket #1217 (simpleSearch.action results display XML markup) created by rcave
Simple search results display the XML markup that occurs around the search …
14:04 Ticket #1185 (Force Ingest of articles does not work) closed by rcave
fixed: Verified that the force ingest of an article works.
13:40 Ticket #1199 (creating issue fails) closed by rcave
fixed: Verified that you can create an issue. Closing this ticket.
13:34 Ticket #1174 (Update to content in related tab) closed by rcave
fixed: Verified that the changes in this ticket are complete.
13:32 Ticket #1202 (Clearing Image URI in ISsue Management Fails) closed by rcave
fixed: Closing this ticket. Image URI is set to null. See the …
13:29 Ticket #1145 (can't click into fields in ambra-registration register.action with IE6, ...) closed by rcave
fixed: Verified that editProfile.action and prePopulateNewUser.action work …
13:07 Ticket #1193 (delete articles from issue using article URI field) closed by rcave
fixed: Verified that you cannot delete articles from the Article URI List
12:58 Ticket #1191 (Can add articles directly to Article URI list) closed by rcave
fixed: Confirmed that you cannot manually add or delete an issue DOI in the …
12:06 Ticket #1212 (Medicine - email article form: background color is wrong) closed by rcave
fixed: Verified that the background color on the 'email this article' form is …
11:57 Ticket #1216 (ONE homepage timeout) created by rcave
Trying to bring up the ONE homepage on the demo site results in a Mulgara …
11:00 Ticket #1207 (Can only post one Note and GSOD) closed by rcave
fixed: Verified that multiple notes can be created and GSOD is not appearing.
10:57 Ticket #1139 (Admin console exception - SAXParseException: Premature end of file) closed by rcave
fixed: Verified that the error message appears when an annotation body is null. …

03/20/09:

18:47 Changeset [7522] by ssterling
Article page, right-hand column: Italicized journal name for the …
16:55 Ticket #1198 (delete article needs to return package to the ingestion-queue) reopened by npeterson
Under "Delete Article", I entered the article URI …
16:53 Changeset [7521] by josowski
Correction to pubmed name in the javascript library References #1174
16:49 Ticket #1215 (Move addArticle and removeArticle methods into a service class) created by npeterson
Cross-pubbed a couple of genetics articles in compbiol …
16:28 Ticket #1125 (create "issue" feed that follows issue ordering) closed by russ
duplicate: dupe with #1150
16:09 Changeset [7520] by josowski
Correction to pubmed link. The link now reads PubMed? Central
16:01 Ticket #1214 (eLetters to Annotations migration HTML rendering of hyperlink) closed by npeterson
invalid
15:59 Ticket #1214 (eLetters to Annotations migration HTML rendering of hyperlink) created by npeterson
Test the eLetters to Annotations migration from AP to Ambra Description: …
15:59 Ticket #1170 (Note dialog containing guidelines needs a close button) closed by rcave
fixed: Verified that the note dialog contains a cancel button and does not make …
15:56 Ticket #1213 (delete volume without deleting issues) created by npeterson
Deleted the entire vol 5 that existed in Genetics, without first deleting …
15:54 Changeset [7519] by ssterling
Article page, right-hand column: now use a non-URL-encoded URL when …
15:52 Ticket #1209 (Advanced search "AND" operator is broken) closed by rcave
duplicate
15:35 Ticket #1212 (Medicine - email article form: background color is wrong) created by stoomey
Need to update style ".pone-form fieldset" in forms.css
15:24 Ticket #1211 (Admin Panel - Unable to Manually Order Articles) created by npeterson
working in issue info:doi/10.1371/issue.pcbi.v01.i01, i cannot manually …
15:19 Changeset [7518] by dragisak
Add unit test for XPointerUtils
14:49 Ticket #1210 (Change Pubmed to PubMed on Related tab for an article) created by npeterson
under Related Articles on the web Pubmed should be written PubMed? (i.e. …
14:45 Ticket #1177 (Allow feed of type=Issue to default to current Issue if issueURI is not ...) closed by russ
fixed: verified.
14:38 Ticket #1174 (Update to content in related tab) reopened by npeterson
Verified this article returns a result set in PubMed? Central, but the ALM …
14:38 Changeset [7517] by josowski
Bringing file inline with changes made to the plos journal overrides file.
14:21 Changeset [7516] by russ
fix a typo
14:21 Changeset [7515] by russ
add new article type to plos-specific configs
14:16 Ticket #1144 (XML test failures on windows) closed by russ
fixed: works!
14:03 Ticket #1209 (Advanced search "AND" operator is broken) created by stoomey
When searching for co-authors, the "AND" operator seems to be broken as it …
13:18 Changeset [7514] by dragisak
JournalService?.getCurrentJournal deprecation. This method should be …
11:46 Changeset [7513] by dragisak
Display more meaningfull error. Flags are displayed but checkboxes are …
11:45 Changeset [7512] by stoomey
Added urls to info icons for Related Articles and Related Blog posts on …
11:18 Changeset [7511] by stoomey
Corrected the link on the text "guidelines for commenting/rating" - it …
11:01 Ticket #1208 (Competing interests text automatically placed on old comments) created by rcave
Old comments now have the line "no competing interests declared" …
10:23 Changeset [7510] by wtoconnor
Cosmetic Changes. Added another column to the header row. Fixed …
10:09 Changeset [7509] by josowski
Added cancel buttons and links to the annotation context window. …
09:58 Changeset [7508] by wtoconnor
Added check for adding blank URI during IssueCreation?. Added Logging of …
09:56 Ticket #1188 (Cross published articles need "Published in <journal>" text/link) reopened by rcave
09:55 Changeset [7507] by josowski
This template wouldn't render correctly when called from the fetchBody …
09:51 Changeset [7506] by stoomey
Minor update to reflect revised display of formal corrections and …
09:45 Ticket #1207 (Can only post one Note and GSOD) created by rcave
If I post a comment or correction to a paper; it will save the comment, …
09:02 Ticket #1206 (Update link in Rating instruction text) created by rcave
When adding a note, comment or rating, the instruction text contains a …
09:00 Ticket #1205 (Update to 'Published In' block) created by rcave
Relating to the 'Published in the' box (see also accompanying screen …

03/19/09:

23:35 Ticket #1204 (Related articles missing <italic>) created by rcave
The article titles in RHC Related Content block are missing <italic> tags. …
23:31 Ticket #1188 (Cross published articles need "Published in <journal>" text/link) closed by rcave
fixed: Verified that the cross-published journal is appearing correctly under the …
22:38 Ticket #1139 (Admin console exception - SAXParseException: Premature end of file) reopened by rcave
17:14 Ticket #1194 (delete article failing) closed by rcave
fixed: Verified that the page renders correctly after an article delete.
16:51 Changeset [7505] by josowski
Removing Pubmed name override as the ALM server now gives us an …
16:47 Changeset [7504] by ssterling
On the Article page, removed ability to add Annotations to the headers of …
16:40 Ticket #1203 (Deletion of an Article does not update Issues list of articles.) created by wtoconnor
If you delete an article that is currently in the article list of an …
16:13 Changeset [7503] by wtoconnor
Assign image URI to null when user submits a blank URI. Addresses #1202
16:10 Ticket #1202 (Clearing Image URI in ISsue Management Fails) created by wtoconnor
Need to Set URI to null for blank URI's
16:00 Changeset [7502] by wtoconnor
Changed URI conversion to log exceptions per the coding convertion. Added …
15:58 Changeset [7501] by josowski
It appears as though some badly formated CSS can cause form fields to be …
15:51 Ticket #1168 (Duplicated acknowledgments on the article pages) closed by rcave
fixed: Verified that the duplicate Acknowledgements headers and styling in …
15:44 Changeset [7500] by stoomey
Corrected the order of the display of article type header and crosslink …
15:06 Ticket #1198 (delete article needs to return package to the ingestion-queue) closed by rcave
fixed: Verified that an article zip file is returned to the ingestion-queue on …
14:52 Changeset [7499] by ssterling
On the Article page: if this Article was cross-published from another …
14:50 Ticket #1110 (Indicate formal correction or retraction annotation in browseIssue.action) closed by rcave
fixed: Verified that the formal correction and retraction are appearing correctly …
14:36 Ticket #1201 (Re-order Issue removes all articles from that issue) created by rcave
In volumeManagement.action, issues are created and articles added to every …
14:35 Changeset [7498] by josowski
Cleaned Up / Formatted some XSL tags
14:27 Ticket #1173 (can't figure out how to edit/order issue) closed by rcave
fixed: Verified that issue ordering is working correctly in …
14:22 Ticket #1189 (list of cross published articles need to be links) closed by rcave
fixed: Verified that the cross published article title is linked in …
14:18 Ticket #1192 (article URI needs to be linked) closed by rcave
fixed: Verified that the article title is linked in issueManagement.action
14:17 Ticket #1180 (Article titles not correctly italicized on article pages) closed by rcave
fixed: Verified that the article title appears correctly when <italic> tags are …
14:14 Ticket #1187 (Article blurb icon only shows in Related/Comments tab) closed by rcave
fixed: Verified that the article type blurb displays on the article tab.
14:11 Ticket #1166 (browseIssue.action bugs - spacing and "0" after author anmes) closed by rcave
fixed: Verified that this has been fixed for all template files.
14:10 Ticket #1162 (Rating links change to javascript:void(0); when logged in) closed by rcave
fixed: Verified that the rating link is working correctly in IE6 and FF3.
14:03 Changeset [7497] by ssterling
Removed superfluous logging statements.
13:13 Changeset [7496] by wtoconnor
Added a link to the article listed in the issue. Added link to issue in …
13:13 Changeset [7495] by wtoconnor
Added fetchArticel to Cross Publish Management ftl. Addresses #1189
12:08 Ticket #1190 (Browse by Pub Date slowness after cross publishing) closed by rcave
worksforme: I can't reproduce the problem.
12:01 Ticket #1183 (Jump to Menu UI issue) closed by rcave
fixed: Verified that the list menu is rendered correctly in IE6 and FF3.
11:52 Ticket #1153 (IE6, IE7, FF2 - error block on notation and rating form has no bottom ...) closed by rcave
fixed: Verified that the rating error block is appearing correctly in IE6.
11:50 Ticket #1151 (IE6, IE7, FF2 - notation and ratings forms, right column of forms is ...) closed by rcave
fixed: Verified that the RHC column in the note and ratings forms are bottom …
11:46 Ticket #1161 (Included in collections block in article rhc related content block is ...) closed by rcave
fixed: Verified that the "Included in" styling in the RHC is correct.
11:40 Changeset [7494] by josowski
Some minor changes to the code formating.
11:40 Ticket #1146 (IE6 - tabs overlap title on article page) closed by rcave
fixed: Verified that the tabs align correctly below the title in IE6. I've …
11:36 Changeset [7493] by dragisak
Bug fix: Journal object needs to be initialized before returning to …
11:36 Changeset [7492] by stoomey
Commented out the rss link and icon on the article comments page until the …
11:35 Ticket #1148 (IE6, IE7 - general comment form display broken) closed by rcave
fixed: Verified that posting and replying to a general comment displays correctly …
11:34 Changeset [7491] by stoomey
New style added to suppress display of default background bullet on the …
11:18 Changeset [7490] by josowski
IE 6 was having problems with the registration form and was not getting …
11:09 Ticket #1195 (error on ordering issues in a volume) closed by rcave
wontfix
10:20 Changeset [7489] by stoomey
Invalid <p> tags removed from around the retraction block div.
09:50 Changeset [7488] by dragisak
Remove unused variables, imports and minor code cleanup.

03/18/09:

18:25 Ticket #1137 (Retractions link is missing in the article comments tab) closed by rcave
fixed: Verified that the retraction link is appearing for all journals.
17:14 Ticket #1200 (article display messed up in topazproject plos templates) created by ronald
The right-hand side (download links, ratings, etc) is messed up in firefox …
17:10 Changeset [7487] by josowski
The ratings.js was referencing the incorrect error display html element. …
17:07 Ticket #1199 (creating issue fails) created by npeterson
Under "Volume Management", "Create Issue" section: Entered Issue URI, …
17:06 Ticket #1182 (Setter and Getters not conforming to Java Bean Spec) closed by wtoconnor
fixed
17:04 Ticket #1198 (delete article needs to return package to the ingestion-queue) created by npeterson
deleted pcbi.1000236 and pcbi.1000245 from -demo, and though the delete …
16:58 Changeset [7486] by wtoconnor
Removed ${articleInfo.corrections?size } that was creating the offending …
16:55 Ticket #1197 (unable to order volumes withing a journal) created by npeterson
There is no way to order the volumes within the journal. The order of the …
16:53 Ticket #1196 (manage virtual journals set current issue) created by npeterson
In Manage Virtual Journals, under Set Current Issue, I updated the current …
16:50 Ticket #1195 (error on ordering issues in a volume) created by npeterson
On the Volume Management page, under "Update Volume", I added an existing …
16:48 Ticket #1194 (delete article failing) created by npeterson
Was able to successfully delete an article, but it took me to a strange …
16:47 Changeset [7485] by stoomey
New style added to suppress display of default background bullet on the …
16:46 Ticket #1193 (delete articles from issue using article URI field) created by npeterson
Unable to delete all articles using the instructions: "Web Producer …
16:45 Changeset [7484] by dragisak
Code cleanup: * It is more efficient to use an iterator on the entrySet …
16:43 Ticket #1192 (article URI needs to be linked) created by npeterson
Under Issue Managment, I use Add Articles block and add an article. In the …
16:42 Ticket #1191 (Can add articles directly to Article URI list) created by npeterson
It turns out that I can bypass the 'Add Articles' function, and add …
16:39 Ticket #1190 (Browse by Pub Date slowness after cross publishing) created by npeterson
was able to successfully cross-publish these three genetics articles in …
16:35 Ticket #1189 (list of cross published articles need to be links) created by npeterson
The list of Cross-Published Articles are not links (see screenshot). They …
16:32 Changeset [7483] by dragisak
Bug fix: Using equals on different classes will always return false.
16:28 Changeset [7482] by dragisak
It's a good practice to make comparators serializable in case they are …
16:25 Changeset [7481] by dragisak
Add serialVersionUID to Serializable class.
16:23 Changeset [7480] by dragisak
Minor bug fix: else was bound to always cause NullPointerException?
16:21 Changeset [7479] by dragisak
Minor bug fix: self assignment of a local variable
16:16 Changeset [7478] by stoomey
Minor visual update to change the numbers of the numbered list in the …
16:12 Ticket #1147 (articleGrpListToCSV does not add comma between article types.) closed by rcave
fixed: Verified that the article URIs are separated by commas after an update.
16:10 Ticket #1109 (Allow manual ordering of articles for browseIssue.action) closed by rcave
fixed: Closing this ticket as the feature is complete to some extent. We'll open …
15:41 Ticket #1188 (Cross published articles need "Published in <journal>" text/link) created by rcave
The current functionality of display the journal that an article was …
15:29 Ticket #1149 (Cross Publishing after ingest allows cross publishing of articles that are ...) closed by rcave
fixed: Verified that the matrix of journals in the admin panel does not include …
15:26 Ticket #1164 (Competing interest statement display in annotations) closed by rcave
fixed: Verified that the competing interests statement is displayed correctly for …
15:19 Ticket #1187 (Article blurb icon only shows in Related/Comments tab) created by rcave
The article blurb inco/link only show when on the Related or Comments tab. …
15:05 Ticket #1154 (Error block on notation and rating form remains visible if posting is ...) closed by rcave
fixed: Verified that the error message does not appear the second time.
14:58 Ticket #1179 ("PLoS" should not be italicized in Related Content box) closed by rcave
fixed: Verified that the italics have been removed from the offending PLoS text.
14:56 Ticket #1178 (simpleSearch.action search results include incorrect HTML) closed by rcave
fixed: This appears to be fixed now. I can't tell what commit was the culprit.
14:47 Ticket #1169 (Text for notes dialog on areas that can't be annotated) closed by rcave
fixed: Verified that the text has been updated correctly as indicated.
14:44 Ticket #1167 (Link to 'Competing Interest page' incorrect) closed by rcave
fixed: Verified that the links to the Competing Interest statement are correct in …
14:43 Ticket #1186 (CIS bolded lead-in) created by stoomey
Wherever we display the CIS statement, the leader, either "No competing …
14:35 Ticket #1159 (IE6, IE7 - advanced search subject categories radio buttons broken) closed by rcave
fixed: Verified that the advanced search subject categories are working correctly …
14:34 Changeset [7477] by stoomey
fixed display bug caused by removing extra closing div: </div>.
14:33 Ticket #1174 (Update to content in related tab) closed by rcave
fixed: Verified that the issues in this ticket have been resolved. The "PubMed?
14:26 Changeset [7476] by dragisak
Minor code cleanup: * Remove unused import. * There is no need to …
14:20 Changeset [7475] by josowski
Switched to using s.url to create urls that respect application-context …
14:11 Changeset [7474] by wtoconnor
Having the transaction covering the entire action is not desirable for …
14:08 Changeset [7473] by josowski
Title was not being rendered correctly. This corrects the issue. …
13:50 Changeset [7472] by wtoconnor
The forced ingest of articles does not work because the action is not …
13:48 Ticket #1185 (Force Ingest of articles does not work) created by wtoconnor
The forced ingest of articles does not work because the action is not …
13:34 Changeset [7471] by stoomey
Updated html for display of retractions on the article page. Formatting …
13:19 Changeset [7470] by stoomey
Updated html, including the html generated by javascript, and css to …
13:01 Ticket #1184 (Updated the anchor codes for Article Blurbs) created by josowski
Joe, Updated the anchor codes on dev for medicine/static/descriptions.ftl …
12:21 Changeset [7469] by josowski
Formating changes for the competing interest statements. References #1164
12:10 Changeset [7468] by josowski
Removed tab characters and replaced with spaces.
12:06 Changeset [7467] by wtoconnor
Need to keep simple collection sync'd with the issue list because there is …
12:02 Changeset [7466] by wtoconnor
Unable to edit or order issues. This was because the volumeManagment.ftl …
11:50 Changeset [7465] by josowski
Linking in competing interest page References #1167
11:41 Changeset [7464] by wtoconnor
Several of the setters and getters don't conform to Java Bean spec. …
11:36 Changeset [7463] by dragisak
Make tests compatible with MS Windows. Addresses #1144
11:34 Ticket #1183 (Jump to Menu UI issue) created by josowski
It looks like the list items aren't getting rendered properly. Look …
11:28 Changeset [7462] by pradeep
Optimize redundant copies and ensure immutability of cached entry. Update …
11:26 Changeset [7461] by josowski
Removed tab characters and made recommended text changes References #1169
10:58 Changeset [7460] by josowski
Removing italics from the organization name in the related content box. …
10:02 Changeset [7459] by josowski
Fixing some formating and organizational issues with the Related Articles …
09:36 Changeset [7458] by stoomey
Added css to correctly size the containers in IE6. This addresses the …
09:34 Ticket #1182 (Setter and Getters not conforming to Java Bean Spec) created by wtoconnor
Some of the setters and getters in action don't conform to the JavaBean?

03/17/09:

19:08 Changeset [7457] by pradeep
Optimize puts to object-cache during onPostRead() so that only the first …
18:24 Ticket #1124 (Author order incorrect in search results) closed by ronald
fixed: (In [7456]) Display authors in search results in the order they appear in …
18:24 Changeset [7456] by ronald
Display authors in search results in the order they appear in the article. …
18:24 Changeset [7455] by ronald
Minor code formatting cleanup.
18:23 Ticket #1157 (PLoS ONE - simple search sometimes results in site error) closed by ronald
fixed: (In [7454]) Properly deal with restricted articles (closes #1157). There …
18:23 Changeset [7454] by ronald
Properly deal with restricted articles (closes #1157). There were two …
17:28 Ticket #1181 (Digg not accepting article bookmarks) created by rcave
The URL sent to Digg is incorrect or needs to be updated. Digg thinks …
17:15 Ticket #1180 (Article titles not correctly italicized on article pages) created by rcave
Article titles not correctly italicized on article pages. See attached …
17:11 Ticket #1179 ("PLoS" should not be italicized in Related Content box) created by rcave
Please remove italics from "PLoS" as appears in the "Related PLoS …
17:05 Changeset [7453] by stoomey
I was able to fix items 3 and 4 on the ticket, as well as fix the message …
16:58 Ticket #1178 (simpleSearch.action search results include incorrect HTML) created by rcave
Search results return a "<!DOCTYPE a ..." in the search results. It's …
16:55 Changeset [7452] by wtoconnor
Allow feed of type=Issue to default to current Issue if issueURI is not …
16:47 Ticket #1177 (Allow feed of type=Issue to default to current Issue if issueURI is not ...) created by wtoconnor
Allow feed of type=Issue to default to current Issue if issueURI is not …
16:37 Changeset [7451] by wtoconnor
Added a new plos markup for article-type in extended feed. This will allow …
16:36 Changeset [7450] by josowski
Reworked logic for what displays when on the article comments page. This …
15:55 Changeset [7449] by stoomey
The hidden div containing the popup widgets, loading cycle gif, etc. had a …
15:48 Ticket #1176 (Advanced Search - creator AND results incorrect) created by rcave
When using advanced search for multiple authors on the ONE test site …
15:35 Ticket #1175 (Adding a note to a hyperlink removes the hyperlink.) created by rcave
Adding a note to a hyperlink removes the hyperlink. The original hyperlink …
15:27 Changeset [7448] by stoomey
Disabled init_global.js and added css to correctly size the containers in …
14:51 Ticket #1174 (Update to content in related tab) created by rcave
1. Cited in "PubMed?" should say "PubMed? Central" 2. Cited in CiteULike …
14:48 Ticket #1173 (can't figure out how to edit/order issue) created by russ
 http://ploscompbiol.test.092.full/admin/manageVirtualJournals.action
14:46 Ticket #1172 (for automatically ordered issue, issue feed ordering is different from ...) created by russ
for an automatically ordered issue, the browse issue page groups by …
14:42 Ticket #1171 (Should not be able to add a note annotation to Abstract text) created by rcave
The Abstract text at the top of an article should not be allowed for …
13:35 Ticket #1170 (Note dialog containing guidelines needs a close button) created by rcave
When creating a new note on an article, the first dialog box needs to …
12:53 Ticket #1169 (Text for notes dialog on areas that can't be annotated) created by rcave
Please update the language in the annotation bubble which appears when you …
12:46 Ticket #1168 (Duplicated acknowledgments on the article pages) created by rcave
1. The acknowledgments has two entries in the 'Jump To' section - see …
12:19 Ticket #1167 (Link to 'Competing Interest page' incorrect) created by rcave
The link to the 'Competing Interest page' in an annotation dialog is …
12:12 Ticket #1166 (browseIssue.action bugs - spacing and "0" after author anmes) created by rcave
Each table of contents page has extra spacing before the commas in the …
12:05 Ticket #1165 (ONE template is displaying all the hidden elements.) created by rcave
There's lots of white space at the bottom of every article. This white …
11:51 Changeset [7447] by wtoconnor
Adding a bash profile for setting up evironment on ec2.
10:12 Ticket #1164 (Competing interest statement display in annotations) created by rcave
The competing interest statement should go directly after the body (above …
07:20 Ticket #1163 (Expression thisPage is undefined on first view of article) created by rcave
Occasionally. When requesting a page from the server for the first time …

03/16/09:

23:57 Ticket #1137 (Retractions link is missing in the article comments tab) reopened by rcave
Formal corrections and retractions are not showing in the Comments tab. …
23:22 Ticket #1160 (Related content block on article page RHC should only display subject ...) closed by rcave
fixed: Verified that the changes meet the uses cases.
23:17 Ticket #1162 (Rating links change to javascript:void(0); when logged in) created by rcave
After logging in, both the "See all categories" and "Rate this article" …
18:33 Changeset [7446] by josowski
This should resolve an issue with IE6 and IE7 not behaving correctly with …
17:37 Changeset [7445] by josowski
As started in the trac item. This addresses some minor data and formating …
16:17 Changeset [7444] by wtoconnor
Added new ArticleFeed? type=Issue and parameter IssueURI which returns the …
16:13 Changeset [7443] by stoomey
Removed class "rhcBox_type2" that was applied to the child div of the …
16:02 Changeset [7442] by josowski
Error messages in the ratings and context menu dialogs show now disappear …
15:59 Ticket #1156 (Browse by Subject - number of articles in category missing on PLoS ONE) closed by russ
invalid: yes. pete requested this change recently. susanne should be able to dig up …
15:56 Ticket #1052 (Custom configuration for recently published article block) closed by rcave
fixed: Verified that the custom configuration for the recently published block is …
15:55 Ticket #1076 (Selection of recent articles for display on a journal front page) closed by rcave
fixed: Verified that the custom configuration for the recently published block is …
15:49 Changeset [7441] by russ
add alm configuration to plos-specific packages ambra.xml configuration
15:39 Ticket #1161 (Included in collections block in article rhc related content block is ...) created by stoomey
In the article rhc related content block, the child div with id of …
15:03 Ticket #1141 (Invalid link sent to the secureRedirect.action from Related or Comments ...) closed by rcave
fixed: Verified that the redirect link from the research article, related article …
14:10 Changeset [7440] by wtoconnor
The AddArticle? in IssueManagment? was not working because the field anmes …
14:09 Changeset [7439] by wtoconnor
The CSV string created by articleGrpListToCSV was not inserting commas …
14:08 Changeset [7438] by wtoconnor
Prevent Cross Publishing into current journal. After and ingest the admin …
13:27 Changeset [7437] by josowski
Changes / Improvements to the ALM interface to match changes made on the …
13:21 Changeset [7436] by stoomey
Updated CSS and added a new style ("gutter") to fix the broken general …
13:18 Changeset [7435] by stoomey
Minor css updates to overrided a changed dijit style name, a result of the …
13:09 Changeset [7434] by stoomey
Minor image update to fix bug where article menu breaks when there's a …
13:03 Changeset [7433] by stoomey
Minor css updates to fix display bugs. References #1115
13:02 Changeset [7432] by stoomey
Minor css updates to fix display bugs. References #1115
12:47 Changeset [7431] by josowski
Moving the article level metrics server setting from a javascript constant …
12:04 Changeset [7430] by josowski
Making the RHC more generic and inline with the use cases defined on the …
10:29 Changeset [7429] by dragisak
Make test MS Windows compatible. Addresses #1144
10:13 Changeset [7428] by josowski
Made the regular expression for generating the "thisPage" variable a …
10:01 Ticket #1160 (Related content block on article page RHC should only display subject ...) created by stoomey
On the article page only ONE should display article subject categories in …
09:55 Changeset [7427] by dragisak
Make test MS Windows compatible. Addresses #1144

03/14/09:

15:54 Ticket #1159 (IE6, IE7 - advanced search subject categories radio buttons broken) created by stoomey
In the advanced search form Subject Categories section, if you select the …
15:49 Ticket #1158 (IE6 - Advanced search form date range calendar position is wrong) created by stoomey
In IE6, when you select "Specify a date range..." from the dates pulldown …
15:46 Changeset [7426] by dragisak
Use XMLUnit to compare xml. Addresses #1144
15:35 Ticket #1157 (PLoS ONE - simple search sometimes results in site error) created by stoomey
When I attempt to conduct a simple search on ONE (e.g. entering "rna" into …
15:34 Changeset [7425] by dragisak
Code cleanup. Remove indirection in the methods.
15:23 Changeset [7424] by dragisak
Minor code changes.
15:15 Ticket #1156 (Browse by Subject - number of articles in category missing on PLoS ONE) created by stoomey
On the Browse by Subject page on ONE, the number showing how many articles …
15:11 Ticket #1155 (Safari 3, Windows - annotations, corrections, retractions not displayed on ...) created by stoomey
On Safari 3, Windows version, annotation, corrections, and retractions are …
15:03 Ticket #1154 (Error block on notation and rating form remains visible if posting is ...) created by stoomey
Here's how to reproduce this bug: 1. Go to and article you haven't rated …
14:54 Ticket #1153 (IE6, IE7, FF2 - error block on notation and rating form has no bottom ...) created by stoomey
The error block on notation and rating form has no bottom margin. It …
14:48 Ticket #1152 (Issue add article broken) created by wtoconnor
Issue Add article in the admin panel is broken. ftl field does not match …
14:44 Ticket #1151 (IE6, IE7, FF2 - notation and ratings forms, right column of forms is ...) created by stoomey
On the notation and ratings forms, right column of forms is aligned top. …
14:40 Ticket #1150 (Add type Issue to article feed for eToc scripts) created by wtoconnor
The eTOC scripts need to get an ordered list of articles for the mass …
14:37 Ticket #1149 (Cross Publishing after ingest allows cross publishing of articles that are ...) created by wtoconnor
After an ingest the admin is presented with the cross publishing matrix. …
14:34 Ticket #1148 (IE6, IE7 - general comment form display broken) created by stoomey
In IE6 and IE7 the form for entering a general comment on an article is …
14:32 Ticket #1147 (articleGrpListToCSV does not add comma between article types.) created by wtoconnor
When building a CSV string of article URIs articleGrpListToCSV does not …
14:19 Ticket #1146 (IE6 - tabs overlap title on article page) created by stoomey
The article tabs overlap the article title on IE6. This bug only seems to …
13:58 Ticket #1145 (can't click into fields in ambra-registration register.action with IE6, ...) created by stoomey
In IE6 I'm unable to use the sign up form to create a new account. Text …
13:49 Changeset [7423] by dragisak
Modify articles by category query to avoid lazy loading of Article object …

03/13/09:

16:53 Ticket #1144 (XML test failures on windows) created by russ
maybe on linux too? […] looks like expected == received, so i'm not …
16:32 Changeset [7422] by wtoconnor
Make changes to admin panel to allow the ordering of articles within …
15:08 Changeset [7421] by russ
update FileUtilsTest?.java. should have been part of r7417
14:56 Changeset [7420] by ssterling
Added the Retraction Title to the Retraction block at the top of the …
13:50 Changeset [7419] by russ
minor text change will allow us to reduce plos overrides. we really need …
13:27 Changeset [7418] by russ
fix path for article_content include
13:27 Changeset [7417] by russ
mime type updates for 0.9.2 -separate mime types for .ps and eps -fix …
12:11 Ticket #1118 (Article sub pages need a standard link back to the article.) closed by rcave
fixed: Verified that the standarized link now appears on the citation download …
09:28 Changeset [7416] by dragisak
This files should have been included with r7415.

03/12/09:

17:31 Changeset [7415] by dragisak
BrowseService? refactoring. * Caching of articles by category was done …
17:16 Changeset [7414] by josowski
Added in site links for PubMed?, Postgenomic and Bloglines References …
16:24 Changeset [7413] by josowski
Filename change on the spinner loading icon. References #1115
16:22 Ticket #1143 (prepare-sip creates a bad MANIFEST.xml) created by russ
prepare-sip sometimes creates bad entries in MANIFEST.xml. if prepare-sip …
16:21 Ticket #1142 (prepare-sip sax error) created by russ
sometimes prepare-sip throws an error that seems to have nothing to do …
16:17 Changeset [7412] by josowski
Updates, changes and improvements to related articles linking logic. …
15:25 Changeset [7411] by stoomey
New animated gif to display for inline data display waiting period. …
15:13 Changeset [7410] by stoomey
CSS updates to address display bugs. Includes restoring styles for the …
14:45 Changeset [7409] by josowski
Looks like r7248 broke the calendar control used in the advanced search …
14:10 Changeset [7408] by josowski
We missed one article type code. This should have been part of r7318
13:10 Changeset [7407] by josowski
Discovered a depricated URL filter. The struts chain no longer exists. …
12:35 Changeset [7406] by josowski
Invalid links are being sent to the secure redirect page when viewing the …
12:08 Changeset [7405] by josowski
Adding a link back to the orginal article on the citationList page …

03/11/09:

20:50 Ticket #1133 (Article page link to issue) closed by rcave
fixed: Verified that the link to the issue is appearing correctly in the RHC.
20:42 Ticket #1115 (Article Page Redesign) closed by rcave
fixed: Verified that the article page redesign has been completed. Any new …
20:37 Ticket #1137 (Retractions link is missing in the article comments tab) closed by rcave
fixed: Verified that the retraction link is appearing correctly in the Comments …
20:36 Ticket #1136 (Competing Interest Statement) closed by rcave
fixed: Verified that the competing interest statement is appearing correctly in …
20:29 Ticket #1141 (Invalid link sent to the secureRedirect.action from Related or Comments ...) created by rcave
Try to login from the Related or Comment tab. The redirect link is …
17:59 Changeset [7404] by ssterling
Removed a String that had been mistakenly inserted in revision 7363.
17:07 Changeset [7403] by josowski
Adding the competing interest statement to the list ratings page …
16:54 Ticket #1062 (Advanced Search page: error displaying previous query terms) closed by rcave
fixed: Verified that the simple search terms are carried into the advanced search …
16:52 Changeset [7402] by josowski
Improvements on how we display the competing interest statement …
16:47 Ticket #1138 (Annotation with Competing Interest flagged as "correction" creates ...) closed by rcave
fixed: Verified that you can't click on the submit button multiple times. Setting …
16:24 Ticket #1139 (Admin console exception - SAXParseException: Premature end of file) closed by rcave
fixed: The admin console loads without receiving an exception. Marking this …
15:43 Changeset [7401] by ssterling
Article page, right-hand column: added links to all of the Issues in which …
15:28 Changeset [7400] by josowski
Display a link to retractions as well as improve how we handle …
15:20 Changeset [7399] by josowski
The baseAnnotation competing interest statement was being displayed for …
14:23 Changeset [7398] by josowski
Refactored where the call to build the navigation table of contents was …
13:28 Changeset [7397] by josowski
Updated the _tglFields method to also disable button type input fields in …
12:47 Changeset [7396] by josowski
Fixing an issue where the competing interest statement form field would …
12:10 Changeset [7395] by josowski
Adds support for competing interest statements to the display Comment …
11:31 Changeset [7394] by josowski
Formating code to be more inline with the java coding standard and added …
11:21 Changeset [7393] by josowski
The Jump to menu by default was displayed even if no anchors in the …
11:00 Changeset [7392] by josowski
The "top" anchor was being included as a link in the jump to menu, this …
10:58 Changeset [7391] by josowski
If an article type is not defined in the configuration, the article page …
10:32 Changeset [7390] by russ
redefine docTitle variable in article_content.ftl, fixes a bug introduced …

03/10/09:

17:33 Changeset [7389] by josowski
Minor formating changes to the XSL and an updated result for the test case
17:13 Changeset [7388] by stoomey
css updates and images to support article page redesign. References #1115
17:00 Ticket #1140 (Mulgara query returns UnhandledException Error) created by rcave
The query that is hanging Mulgara: […] The journal has cross-pubbed …
16:57 Ticket #1139 (Admin console exception - SAXParseException: Premature end of file) created by rcave
admin.service.FlagManagementService?.getFlaggedComments …
16:31 Changeset [7387] by josowski
Updates to include back to top anchors in the article headings.
15:15 Changeset [7386] by russ
revert changes the moved filesize to the beginning of items in the …
15:10 Changeset [7385] by russ
correct dagger for deceased authors correct underlining for superscripted …
15:07 Changeset [7384] by russ
unscramble citation-type='gov' and citation-type='web' this change was …
15:03 Changeset [7383] by russ
only display 'find this article online' link if there's no ext-link this …
14:58 Changeset [7382] by russ
fix spacing between author contributions heading and section text this …
14:56 Changeset [7381] by russ
add term to the strip-space list. this change was made in plos production …
14:53 Changeset [7380] by russ
preserve italics in glossaries. this change was made in plos production on …
14:47 Changeset [7379] by russ
avoid calling articleInfoX variable without first checking that it exists. …
14:10 Changeset [7378] by ssterling
Removed text displayed with the Retraction type of Annotation.
14:05 Changeset [7377] by russ
add freemarker config to ambraJournal defaults.xml for new article …
13:56 Changeset [7376] by russ
remove virtual journal configuration and freemarker configuration (this …
13:24 Changeset [7375] by ronald
Delete old ingested-data if it exists (this is so a forced publish will …
13:24 Changeset [7374] by ronald
Minor javadoc and comment fixes.
13:23 Changeset [7373] by ronald
Use generics for context variable and the session-map.
13:23 Changeset [7372] by ronald
Minor source formatting fix: break overly long line.
13:19 Changeset [7371] by josowski
Updates to the discussion flagging dijit panel to support competing …
13:17 Changeset [7370] by josowski
Fixing a bug that breaks this FTL if the competing interest statement is …
12:29 Changeset [7369] by josowski
Removing OTM type from the competing interest interface, so it can be …
12:23 Changeset [7368] by josowski
Improving logic to handle nulls returned from the OTM on annotation and …

03/09/09:

23:15 Ticket #1138 (Annotation with Competing Interest flagged as "correction" creates ...) created by rcave
Create an annotation as a "correction" and add a competing interest (CI) …
23:08 Ticket #1137 (Retractions link is missing in the article comments tab) created by rcave
If a retraction annotation type is added to an article, then the default …
18:03 Changeset [7367] by josowski
Adding the competing interest statement to the discussion thread list.
16:54 Changeset [7366] by russ
JO 9977: update plos-specific config files to match article type change
16:49 Changeset [7365] by josowski
Resolves issue with duplicate categories being listed on the related …
16:40 Changeset [7364] by josowski
Cleaning up some javascript and java code to be more in line with the java …
14:54 Ticket #104 (Handling different forms of copyright in NLM DTD 2.3) closed by rcave
fixed: NLM DTD 2.3 has been added to the entity resolver cache. viewnlm-2.xsl …
14:51 Ticket #1031 (Support for NLM DTD 2.3 in entity resolver cache) closed by rcave
fixed: Verified that NLM DTD 2.3 has been added to the entity resolver cache.
14:40 Changeset [7363] by ssterling
Repaired and made more consistent the repopulation of search field values …
14:00 Changeset [7362] by josowski
Resolves Issue with hard coded URLS that didn't respect the application …
12:44 Changeset [7361] by josowski
Moves the competing interest triplet into the correct namespace
11:46 Changeset [7360] by josowski
Implementation of conflict of interest statement logic with some code …
10:43 Ticket #1119 (Usability of slideshow - link back to article for search referers) closed by rcave
fixed: Verified that the link in the article slideshow returns directly to the …
10:38 Ticket #1099 (Search queries resulting in long processing before results returned) closed by rcave
fixed: With the improvements that Ronald made, search results are returning …
10:27 Ticket #1121 (Article Type Blurbs) closed by rcave
fixed: Verified that the article type blurbs are appearing correctly in the …
09:47 Ticket #997 (Update javascript [dojo] in the ambra/registration/webapp project) closed by rcave
fixed: I've verified that the registration and login screens are functioning …

03/06/09:

19:09 Changeset [7359] by pradeep
Rolling back r7357. The ratio of formatting changes to actual changes …
18:16 Ticket #787 (retraction annotation) closed by rcave
fixed: Verified that the retraction citation now has the correct information.
17:25 Changeset [7358] by stoomey
IE specific css updates for competing interest statement ui and commenting …
17:01 Changeset [7357] by josowski
Implementation of conflict of interest statement logic. Addresses #1136
15:52 Changeset [7356] by ssterling
Changed display of Citation information to the page which displays …
13:39 Changeset [7355] by stoomey
Images, css, and ftl updates for competing interest statement ui and …
11:39 Ticket #1136 (Competing Interest Statement) created by rcave
All Annotation dialogs (notes, comments, ratings) need to incorporate a …
11:22 Changeset [7354] by josowski
Implemented style and functional recomendations by Pradeep.
10:49 Changeset [7353] by josowski
Improved/finished the java doc comment for the method added in r7352
10:41 Changeset [7352] by josowski
This resolves a bug where categories were getting displayed multiple …
09:53 Changeset [7351] by dragisak
Remove unused import and fix javadoc.

03/05/09:

15:16 Changeset [7350] by dragisak
Code cleanup. Use method provided in BaseActionSupport?. See r7349
15:10 Ticket #1101 (editAnnotationLoad.action is broken) closed by rcave
fixed: Confirmed fixed.
12:41 Changeset [7349] by dragisak
Put request attribute map and VirtualJournalContext? access into …
10:42 Changeset [7348] by josowski
This fixes an issue where the article TOC was not always being redrawn …
10:31 Changeset [7347] by josowski
Removing a struts reference and javascript that is no longer needed. …
09:28 Changeset [7346] by dragisak
Add Fixme comment.

03/04/09:

17:01 Changeset [7345] by dragisak
Code cleanup. Remove unnecessary indirection.
16:58 Changeset [7344] by russ
remove google analytics configuration from plos templates and plosJournals …
15:05 Changeset [7343] by josowski
Minor changes related to the article page redesign References #1115
14:43 Changeset [7342] by dragisak
Code cleanup. Remove unused imports and unused method parameters.
13:27 Changeset [7341] by josowski
This addreses #1119 When a slideshow is accessed directly from a …
12:04 Changeset [7340] by dragisak
Latest idea setup
11:22 Changeset [7339] by josowski
Implementation of article type blurbs Addresses #1121
10:25 Changeset [7338] by dragisak
Code cleanup. Remove unused variables.
09:40 Changeset [7337] by josowski
Removes the Dojo 0.4.3 dependency from Registration and CAS and repoints …

03/03/09:

14:45 Changeset [7336] by dragisak
AnnotationConverter? was missing Spring setter method. Addresses #1101
14:06 Changeset [7335] by josowski
Removing a typo "ls" committed in r7318
13:19 Changeset [7334] by stoomey
Images and css for article redesign. References #1115
12:29 Changeset [7333] by dragisak
Add retractions to the list of articles in browse issue. Addresses #1110
12:15 Changeset [7332] by pradeep
Delete the dojo src directory also. Should have been part of r7329.
11:35 Changeset [7331] by dragisak
Add test for deleting annotation with null body.
10:40 Changeset [7330] by dragisak
Rename article XML testing result file to .html
00:02 Changeset [7329] by pradeep
Removed dojo src from sub-version and instead pull it from maven. Dojo src …

03/02/09:

23:59 Changeset [7328] by pradeep
Few corrections: * method names must start with lowercase. (from r7318) …
21:08 Changeset [7327] by ronald
Upgrade to javassist 3.9.0. This fixes a synchronization issue which we've …
21:08 Changeset [7326] by ronald
Declare map variables as type Map, not HashMap?. Variables should be …
21:08 Changeset [7325] by ronald
Trivial code simplification.
17:35 Changeset [7324] by russ
update defaults-dev.xml to match ambra.xml. missed this in r7248 also …
17:25 Ticket #1062 (Advanced Search page: error displaying previous query terms) reopened by ronald
This breaks the simple-search -> advanced-search transition: enter some …
17:07 Changeset [7323] by josowski
r7322 changes the xsl so the article title is no longer part of the output …
15:35 Changeset [7322] by josowski
This fixes a bug with the article title. Previously the incorrect title …
15:05 Ticket #1135 (ambra hangs when multiple ambras are in use on the same stack) created by russ
bill reproduced this error when accessing through the webheads, and some …
15:04 Ticket #1134 (ambra hangs under load) created by russ
especially when caches are empty
13:49 Ticket #1112 (Advanced Search: improve client-side date validation) closed by rcave
fixed: Verified that the JavaScript? calendar has been added to …
13:48 Ticket #1062 (Advanced Search page: error displaying previous query terms) closed by rcave
fixed: Verified fixed.
13:26 Changeset [7321] by ssterling
Added Citation information to the page which displays Retractions, so that …
12:35 Changeset [7320] by josowski
This is a minor change to more logicaly display the annotation context …
11:40 Changeset [7319] by josowski
This configuration file tells freemarker to include the ALM javascript on …
10:43 Changeset [7318] by josowski
Article Page Redesign, this changeset has four parts 1 - Article Level …

02/27/09:

10:05 Ticket #1087 (Update Dojo to latest point release (1.2.3)) closed by rcave
fixed
09:21 Changeset [7317] by dragisak
Remove oasis-tablesetup.ent that is not referenced any more. It's …

02/26/09:

16:49 Changeset [7316] by ssterling
Advanced Search fields now repopulate correctly after a Simple Search. …
16:02 Changeset [7315] by dragisak
Prevent redundant changes of annotation type. Partially addresses #1108
15:20 Ticket #1133 (Article page link to issue) created by rcave
If we publish a collection of articles using volumes/issues containers, …
15:06 Changeset [7314] by josowski
Redo Step two of r7311, the SRC distro of Dojo is required.
15:03 Changeset [7313] by josowski
Redo Step one of r7310, the SRC distro of Dojo is required.
14:51 Ticket #1132 (add ttl and set eternal false for some caches) created by russ
because we now allow actions to go ahead without acquiring a cache lock …
14:49 Ticket #1131 (test performance during cache bootstrap) created by russ
when one ambra server in a multi-server stack is restarted, it bootstraps …
14:48 Ticket #1130 (site freezes up during ingest and publish actions) created by russ
compare 0.9.1 and 0.9 examine logs to try and explain differences we …
14:09 Changeset [7312] by josowski
Removing extra working directory included in previous commit. reference …
14:01 Changeset [7311] by josowski
Phase Two of the dojo library upgrade, see #1087
13:58 Changeset [7310] by josowski
Phase One of the dojo library upgrade, see #1087
13:48 Changeset [7309] by dragisak
Revert small change in r7299. Reference to oasis-tablesetup.ent has to …
12:35 Changeset [7308] by ssterling
Comment formatting cleanup. Removed a commented-out method.
10:15 Ticket #931 (extend cascading file lookup filter to freemarker templates) closed by rcave
duplicate: Duplicate of  931

02/25/09:

17:48 Changeset [7307] by ssterling
Advanced Search page: added popup date-pickers. Added the "calendar" …
17:42 Changeset [7306] by ssterling
Implemented dynamic display of recent articles on the front page of every …
17:12 Changeset [7305] by dragisak
Rollback r7304 because files were not added in new Dojo library because of …
16:28 Changeset [7304] by josowski
Phase 1 of upgrading Dojo to 1.2.3 References #1078
14:02 Changeset [7303] by dragisak
Handle new NLM DTD 2.3 <email> tag and use regular expressions instead of …
13:54 Changeset [7302] by dragisak
Allow deletion for annotations that have no body. Annotations can end up …
13:53 Changeset [7301] by dragisak
Allow deletion for annotations that have no body. Annotations can end up …
13:49 Changeset [7300] by dragisak
Add formal corrections to the list of articles in browse issue. Addresses …
13:29 Changeset [7299] by dragisak
Add NLM DTD 2.3 to entity resolver cache. Addresses #1031
12:36 Changeset [7298] by ssterling
Addresses #787 Implemented the Retraction annotation type, based on the …
11:46 Changeset [7297] by dragisak
Comparing XML strings is not reliable way to test if two XML documents are …
11:41 Changeset [7296] by dragisak
Avoid concurrency errors.

02/24/09:

17:14 Changeset [7295] by dragisak
[maven-release-plugin] prepare for next development iteration
17:13 Changeset [7294] by dragisak
[maven-release-plugin] copy for tag the-whole-shebang-0.9.1
17:13 Changeset [7293] by dragisak
[maven-release-plugin] prepare release the-whole-shebang-0.9.1
16:10 Ticket #1120 (Rewrite long URLs in both annotations and articles) closed by rcave
fixed: This was fixed with [ http://www.topazproject.org/trac/changeset/7019
15:40 Changeset [7292] by dragisak
Change dependency to mulgara 2.0.9-t1
14:01 Changeset [7291] by russ
missed a spot in r7290 now that it is no longer the default journal, the …
13:49 Ticket #1129 (IE6 - Can't select subject categories in advanced search) created by rcave
Under IE6 and advanced search you can not select subject categories as the …
13:39 Ticket #1128 (users with + in email address are given invalid verification URLs) created by russ
when a user creates an account with ambra-registration, they are sent a …

02/23/09:

17:31 Ticket #1090 (feed caches don't synchronize) closed by russ
fixed: fixed.
15:11 Ticket #1006 (it's bad to have ambra.virtualJournals.JournalName.url defined in template) closed by russ
fixed: yes, overrides in ambra.xml works great!
13:22 Ticket #1127 (freemarker.journal.page.title configuration does not propagate from ...) created by russ
in 0.9.1, we found we needed to add a page element for article_body.ftl to …
13:18 Ticket #1105 (pgTitleOrig is not being set - breaks social bookmarks and Trackback ping) closed by russ
fixed: (In [7290]) add page element for article_body.ftl for each overlay …
13:18 Changeset [7290] by russ
add page element for article_body.ftl for each overlay journal. this is …
10:23 Changeset [7289] by dragisak
Make sure we use right xslt library in the test. And handle possible log …
09:21 Ticket #1105 (pgTitleOrig is not being set - breaks social bookmarks and Trackback ping) reopened by russ
this is not working in production. i think the problem is that, in …
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