Timeline
07/24/08:
- 17:22 Ticket #998 (String index out of range on correction annotation) created by
- On …
- 16:46 Changeset [6222] by
- addresses #918 Removed the no longer referenced plos dirs from the …
- 16:44 Changeset [6221] by
- addresses #918 Re-named base package name "org.plos" to …
- 16:16 Changeset [6220] by
- addresses #918 Removed the no longer referenced plos dirs from the …
- 16:14 Changeset [6219] by
- addresses #918 Re-named base package name "org.plos" to …
- 15:32 Changeset [6218] by
- addresses #918 Removed the no longer referenced plos dirs from the …
- 15:24 Changeset [6217] by
- addresses #918 Re-named base package name "org.plos" to …
- 14:12 Changeset [6216] by
- addresses #918 Removed the no longer referenced plos dir from the …
- 14:07 Changeset [6215] by
- addresses #918 Re-named base package name "org.plos" to …
- 14:00 Changeset [6214] by
- addresses #918 Removed the no longer referenced plos dirs from the …
- 13:55 Changeset [6213] by
- addresses #918 Re-named base package name "org.plos" to …
- 13:30 Changeset [6212] by
- addresses #918 Removed the no longer referenced plosone dirs from the it …
- 13:26 Changeset [6211] by
- addresses #918 Re-named base package name "org.plosone" to …
- 12:35 Changeset [6210] by
- addresses #918 Removed empty dirs as a result of package re-naming for the …
- 12:23 Changeset [6209] by
- addresses #918 Should have been part of r6206 - propagation of …
- 12:17 Changeset [6208] by
- addresses #918 Should have been part of r6206 - propagation of …
- 11:09 Changeset [6207] by
- addresses #918 Re-named base package name "org.plos" to …
- 10:55 Changeset [6206] by
- addresses #918 Re-named base package name "org.plos" to …
07/23/08:
- 14:17 Ticket #997 (Update javascript [dojo] in the ambra/registration/webapp project) created by
- The javascript in the ambra/registration/webapp project is a cloned …
- 11:41 Ticket #996 (disallow text selection based article annotations for text adjacent to ...) created by
- Currently, annotations created on text or anchors adjacent to a figure or …
07/22/08:
- 16:32 Ticket #995 (article-state cache key is not cleared when article is published) created by
- if anyone tries to access an article before its published, no one can …
- 14:08 Ticket #993 (cas ProxyTicketValidator error when session cookies get out of sync) closed by
- fixed: (In [6205]) Missing return after a redirect to cas-login was causing …
- 14:08 Changeset [6205] by
- Missing return after a redirect to cas-login was causing errors in …
- 10:54 Ticket #994 (Error in search/searchResults.ftl) created by
- […]
07/21/08:
- 23:44 Changeset [6204] by
- Add tests for merge().
- 23:44 Changeset [6203] by
- Fix copy() to copy the id field and blob field also. Also fixed a …
- 18:11 Changeset [6202] by
- Close results when done.
- 18:09 Changeset [6201] by
- Auto-close results on reaching the end, and supply a way to disable that …
- 15:34 Ticket #993 (cas ProxyTicketValidator error when session cookies get out of sync) created by
- there are a variety of situations where it appears that the sessions on …
- 14:04 Ticket #991 (slideshow figures and tables are out of order on newly ingested articles) closed by
- fixed: resolved in r6196
- 12:05 Ticket #992 (representationCache keys are not cleared correctly on reingest (perhaps ...) created by
- after an article delete through the admin pages, the keys in …
- 09:43 Ticket #991 (slideshow figures and tables are out of order on newly ingested articles) created by
- we see the following in mulgara after ingest: […] ronald thinks the …
- 09:12 Ticket #478 (ratings: clicking on "see all categories" before page load is complete ...) closed by
- fixed: looks fixed to me too!
- 03:10 Changeset [6200] by
- Updated to 0.9-rc2
- 03:09 Changeset [6199] by
- Set write flag when using runitql to create the rdf.
07/20/08:
- 18:46 Changeset [6198] by
- Make close() idempotent.
- 18:44 Changeset [6197] by
- Removed unused imports.
- 18:35 Changeset [6196] by
- Order the secondary objects in the order they are first referenced in the …
07/18/08:
- 13:00 Changeset [6195] by
- Tune RepresentationCache?. (not eternal, and don't copy blobs to peers)
07/17/08:
- 15:26 Changeset [6194] by
- Finally a purpose for docs directory. Added Topaz and Ambra logos created …
- 13:52 Ticket #861 (it should not take ~100 mulgara queries to build an article) closed by
- fixed
- 13:52 Ticket #518 (The PLoS web site could be speeded up using common best practices) closed by
- fixed
- 13:40 Ticket #855 (Migrate name change from pubapp to Ambra.) closed by
- fixed: Closing as from now on we need to identify specific set of changes in new …
- 13:34 Ticket #825 (admin article delete function does not handle published articles) closed by
- worksforme: I am closing this one. Please reopen or create a new ticket if this …
- 12:07 Ticket #990 (Invalid annotation URI supplied to listReplyAction) created by
- Saw this in ambra.log: […] It is because the URI with info%3A... is …
- 11:59 Ticket #989 (Add an @Reference or @Predicate(ref=...) annotation to denote references ...) created by
- This removes the alias hack in #6189.
- 10:09 Changeset [6193] by
- Eliminate a bogus lock acuisition warning log when a txn is rolled-back.
- 04:20 Changeset [6192] by
- Fix bug when journal smart-collection-rules are stored with non-normalized …
- 04:15 Ticket #988 (Javascript security warning on annotation display) created by
- http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0000919 …
- 04:11 Ticket #986 (Annotation display messed up) closed by
- duplicate
- 04:10 Ticket #987 (Annotation display messed up) created by
- See the 2nd annotation on …
- 04:09 Ticket #986 (Annotation display messed up) created by
- See the 2nd annotation on …
- 03:26 Changeset [6191] by
- Fix handling of missing 'representation' parameter.
- 02:23 Changeset [6190] by
- Avoid index-out-of-bounds-exception when no volumes have been configured …
07/16/08:
- 18:25 Changeset [6189] by
- Fix the issue where the author list was not showing up in the browse pages …
- 11:13 Ticket #814 (Article Annotation Notification Feed (aka feeds are slow)) closed by
- fixed: Based on latest emails from Russ.
- 11:07 Changeset [6188] by
- update
- 03:55 Ticket #941 (Mulgara transaction timeout support) closed by
- fixed: Have deployed mulgara-2.0-beta-t1, driver-2.0-beta-t1, and btm-1.3-RC2-t1 …
- 03:53 Ticket #896 (Debug and fix the release process.) closed by
- worksforme: Works for me.
- 03:52 Ticket #904 (Infrastructure updates to release Ambra to the general public.) closed by
- fixed: Subversion is open now.
- 02:26 Changeset [6187] by
- [maven-release-plugin] prepare for next development iteration
- 02:25 Changeset [6186] by
- [maven-release-plugin] copy for tag the-whole-shebang-0.9-rc1
- 02:25 Changeset [6185] by
- [maven-release-plugin] prepare release the-whole-shebang-0.9-rc1
- 01:47 Changeset [6184] by
- Bumping mulgara and btm versions from SNAPSHOT to local -t1 versions in …
07/15/08:
- 20:35 Changeset [6183] by
- This will just throw folks off. Remove it till we actually have …
- 19:05 Changeset [6182] by
- final run of 0.8 tests, and many updates to both scripts.
- 18:33 Changeset [6181] by
- set overflowToDisk true for ObjectCache? per discussion with pradeep.
- 17:17 Changeset [6180] by
- reduce maxProcessors and maxThreads on AJP container. typically mulgara …
- 16:51 Changeset [6179] by
- revert diskPersistent change
- 16:27 Changeset [6178] by
- Avoid a site error if the category name param for browse-by-category page …
- 15:56 Changeset [6177] by
- oops. added LFU to each cache separately
- 14:53 Changeset [6176] by
- set LFU as default expiry policy. set many caches to diskPersistent, to …
- 13:51 Changeset [6175] by
- Move Representations to its own cache to make it easier to administer.
- 12:54 Changeset [6174] by
- data and fixes from most recent 0.9 test run
- 00:11 Changeset [6173] by
- Speed up the get query a bit when no filters are involved by avoiding one …
- 00:08 Changeset [6172] by
- Optimize the rdfBag/Seq/Alt query a tad by re-arranging the terms a bit, …
07/14/08:
- 17:30 Changeset [6171] by
- more changes to 0.9 single tests
- 16:50 Changeset [6170] by
- Minor bug fix for IE6 where visited links on the View All Corrections page …
- 15:42 Changeset [6169] by
- Set the tab widget width explicitly on resize as it will shrink if it's …
- 11:42 Changeset [6168] by
- Made Journal Archive dojo tab widget resize itself upon tab selection …
- 09:33 Changeset [6167] by
- Removed the quotes around the cache_storage property value which was …
07/13/08:
- 23:25 Changeset [6166] by
- Moved freemarker param 'template_update_delay' to freemarker.properties as …
- 23:09 Changeset [6165] by
- Minor formatting tweak.
- 23:08 Changeset [6164] by
- Improved our template-loader to delegate resetState too, if necessary.
- 12:10 Changeset [6163] by
- Exit thread randomly to see how mulgara cleans up.
07/12/08:
- 22:13 Changeset [6162] by
- Throw a better exception than NPE when the Representation body is null …
- 15:38 Changeset [6161] by
- Keep the logging level for BlockCacheLine? at warn - at level info it slows …
07/11/08:
- 11:19 Changeset [6160] by
- Fixes multi author name searches. Before, the any or all clause was …
- 10:47 Changeset [6159] by
- This change fixes Safari js issues reported in: …
- 09:08 Changeset [6158] by
- Removed all (hopefully) remaining refs to config_home.js and …
07/10/08:
- 19:23 Changeset [6157] by
- Pass 'null' as the default in case of missing configuration element and …
- 17:10 Changeset [6156] by
- fixed browse action problems in 0.8 script updated 0.9 script to match …
- 15:01 Changeset [6155] by
- Convert string to int before passing it on.
- 14:49 Changeset [6154] by
- Initially hide the dom content that will be inside the tab widget as it …
- 14:41 Changeset [6153] by
- Hmmm...not sure how this was working. Maybe a change of groovy version…
- 13:43 Ticket #952 (DOI server name hard coded in java code.) closed by
- fixed: Tested. Fixed with r6149 and r6150.
- 12:56 Changeset [6152] by
- Rolled back r6151. If the user wants to put strange characters in the …
- 12:36 Changeset [6151] by
- Moved the concatenation of url token strings inside of URLEncoder.encode() …
- 12:15 Changeset [6150] by
- addresses #952 Re-named config key: "ambra.platform.doiAlias" to …
- 09:03 Changeset [6149] by
- addresses #952 Created new config key: "ambra.platform.doiAlias" designed …
07/09/08:
- 21:47 Changeset [6148] by
- Added parameters to use on other machines.
- 17:23 Ticket #985 (it is impossible to remove all issues from a volume) created by
- in manageVolumesIssues, if you try to remove all the issues from a volume …
- 16:51 Ticket #983 (indexArticles.groovy script broken) closed by
- fixed: (In [6147]) Fixes #983. This was a one time script created to index new …
- 16:51 Changeset [6147] by
- Fixes #983. This was a one time script created to index new fields for …
- 16:41 Changeset [6146] by
- Correct alias and mediator name.
- 16:30 Ticket #984 (when giving a user the admin role, clear their entry in permit-admin so ...) created by
- i think it's the user's key in permit-admin that needs clearing here…
- 16:24 Ticket #983 (indexArticles.groovy script broken) created by
- bit rot […]
- 14:44 Changeset [6145] by
- Pass the graph uri to doi-resolver. Somehow we managed to survive with …
- 14:26 Changeset [6144] by
- Created a bash script to download a sample subset of PLoS articles to …
- 13:10 Changeset [6143] by
- data for feeds in 0.9
- 12:50 Changeset [6142] by
- limited stats and tests for 0.9. article and feed tests have been updated.
- 11:54 Changeset [6141] by
- Bettered the js code formatting to more closely adhere to ambra coding …
- 09:51 Ticket #982 (Add HTTP exires header to served static resources) created by
- Instead of forcing the browser to query the server for changes of static …
07/08/08:
- 19:05 Changeset [6140] by
- Attempt to slightly improve the javadocs, mostly related to what the …
- 13:54 Changeset [6139] by
- Re-formatted javascript code based on ambra code style conventions and …
- 13:53 Changeset [6138] by
- - Merged config_discussion.js into init_discussion.js - Merged …
- 11:26 Ticket #981 ('see all ratings' needs paging) created by
- If there are a lot of ratings for an article, the current design won't …
- 11:14 Changeset [6137] by
- Optimize OTM get() query. There is no need to get the id as a projection …
- 07:13 Changeset [6136] by
- Improved the speed of the permissions queries a tad: instead of doing a …
- 05:09 Changeset [6135] by
- Print out how long a query takes if in verbose mode.
- 05:08 Changeset [6134] by
- Avoid duplicate entries in history file by disabling automatic addition of …
- 05:06 Changeset [6133] by
- Set timeout properly via api instead of using a backdoor property.
- 05:05 Changeset [6132] by
- Removed obsolete (and now duplicate) showResults (should've been part of …
- 05:01 Changeset [6131] by
- Clean up various problems with trimming the line and adding the ';' back, …
- 04:05 Changeset [6130] by
- Don't barf on null commands, which can happen if you have two adjacent …
07/07/08:
- 22:55 Changeset [6129] by
- Cannot run this here. Check in half-baked version to run on topaz servers.
- 15:34 Changeset [6128] by
- Added basic structure to do OTM performance testing.
- 15:33 Changeset [6127] by
- Added copyright.
- 11:55 Changeset [6126] by
- Updated colors of related articles link in article rhc (used to be blue …
- 11:42 Ticket #801 (Test: Overload Mulgara with TCP connections to test behavior of RMI) closed by
- fixed: With changes in mulgara from [ http://mulgara.org/trac/changeset/1057 …
- 09:02 Changeset [6125] by
- Set txn timeouts to more sane values. (it is in seconds)
- 02:09 Changeset [6124] by
- Next attempt at fixing shutdown hook (r6110 and r6119): the previous …
- 00:11 Changeset [6123] by
- Optimized the representation migration query. Now it only takes about 4 …
07/06/08:
- 15:38 Changeset [6122] by
- Bunch of changes to Migrator: * Split to 3 txns * first is for new …
- 14:13 Changeset [6121] by
- * Changed upperLimit for read threads * Randomly do rollbacks instead of …
07/05/08:
- 12:34 Changeset [6120] by
- topaz:ObjectInfo rdf:type value needs to be set for Articles too.
- 11:50 Changeset [6119] by
- Attempt to fix shutdown hook cleanup done in r6110. It appears that it's …
- 10:44 Changeset [6118] by
- Fixed missed change of option and use a delete to clean the graph else …
- 02:13 Changeset [6117] by
- Simplify code a bit. Please note: command line options have changed.
07/04/08:
- 23:10 Changeset [6116] by
- *sigh* Do a query after inserting data back.
- 23:07 Changeset [6115] by
- Two changes: * Randomly close the session also * Do a query in the …
- 15:37 Changeset [6114] by
- Ran into a interesting issue when running client on both snape and luna. …
- 13:40 Changeset [6113] by
- Formatting fixes mostly, except one. * If you execute this without any …
- 13:27 Changeset [6112] by
- Removed transaction timeout setting from script and moved to -T …
07/03/08:
- 19:32 Changeset [6111] by
- Do not use filter resolver.
- 16:16 Changeset [6110] by
- Added missing synchronization around access to connections map, and fixed …
- 16:14 Ticket #782 (Clean up artifactId in pom.xml at top level.) closed by
- wontfix: After some more thought, I am leaving this as is. Quirky but probably a …
- 13:38 Changeset [6109] by
- Rolled back white-space reduction since: - we're gzipping already (pre …
- 12:21 Changeset [6108] by
- Fixed stale article page issue (i.e. newly created annotations were not …
- 12:18 Changeset [6107] by
- White-space reduction - arguably imortant since this is the article …
- 11:23 Changeset [6106] by
- Make sure the txn is open while the Answers are being processed. Was …
- 10:05 Changeset [6105] by
- Ensure exception from rollback doesn't mask the actual error.
07/02/08:
- 23:54 Changeset [6104] by
- Revert to default transaction timeout as the larger timeout value should …
- 21:59 Changeset [6103] by
- Print start and stop time to be able to map to corresponding entries in …
- 19:47 Changeset [6102] by
- I think we can pass the boolean directly.
- 18:53 Changeset [6101] by
- Make sure the number of read/write threads are positive.
07/01/08:
- 17:13 Changeset [6100] by
- Removed Russ's merger of Josh Krieger changes in r6099 as there are …
- 16:56 Changeset [6099] by
- josh krieger changes to support bio/med and fix outstanding bugs
- 16:31 Ticket #980 (simple search not searching creator, title or abstract) closed by
- fixed: confirmed fix in r6096. darn camelcase.
- 14:48 Changeset [6098] by
- Removed the now un-necessary dojo script loading delay for the advsearch …
- 14:45 Ticket #978 (advanced search - "where my words occur" drop down is ignored.) closed by
- fixed: (In [6097]) fixes #978 Umm, this field wasn't wired up so I presume it …
- 14:45 Changeset [6097] by
- fixes #978 Umm, this field wasn't wired up so I presume it never worked. …
- 13:49 Changeset [6096] by
- addresses #980 Corrected the syntax for a couple of search related config …
- 10:53 Changeset [6095] by
- Avoid NPE in manage-caches admin page while examining an entry.
- 10:52 Changeset [6094] by
- Remove some unused dependencies.
- 10:02 Ticket #977 (log rotation is broken after upgrade) closed by
- fixed: The weirdness with log4j can occur if there are log4j jar files in the …
- 09:51 Changeset [6093] by
- Strip log4j from mulgara driver and use that in ambra and doi-resolver.
- 04:20 Changeset [6092] by
- Fixed client count display, and removed unnecessary sleep's.
- 02:52 Changeset [6091] by
- Specify different parameters for read and write thread and create write …
06/30/08:
- 23:38 Changeset [6090] by
- * Add missing ; * Reduce amount of data per insert * Make sure you …
- 21:10 Changeset [6089] by
- Added missing ';' to insert.
- 21:10 Changeset [6088] by
- Simplified txn begin.
- 17:11 Changeset [6087] by
- Change graph name and function name. Also use correct update function from …
- 14:55 Changeset [6086] by
- Generate the read/insert/delete queries instead of storing them in an …
- 06:21 Changeset [6085] by
- Set the server-id to avoid warnings on startup. Since we don't support …
06/29/08:
- 18:11 Changeset [6084] by
- Fix reference-queue's generic type.
06/27/08:
- 16:54 Changeset [6083] by
- Added and updated css for browse archive and volume pages to accommodate …
- 16:14 Ticket #975 (add a 'read-only' flag to runitql, to support automated backups) closed by
- fixed: (In [6082]) Added ability to use read-only txns for runitql. Fixes #975
- 16:14 Changeset [6082] by
- Added ability to use read-only txns for runitql. Fixes #975
- 15:39 Ticket #678 (lucene returning the same snippet 3 times on some searches) closed by
- fixed: (In [6081]) Stupid type caused only the first fragment to be picked up and …
- 15:39 Changeset [6081] by
- Stupid type caused only the first fragment to be picked up and appended …
06/26/08:
- 20:28 Changeset [6080] by
- Minor cleanup and a bug fix on the flagged Reply look-up. Note that Reply …
- 20:08 Changeset [6079] by
- Reduce the object-cache load by doing the journal based look-up only for …
- 18:05 Ticket #973 (can't save a user profile) closed by
- fixed: Ignore last post - confirmed works in r6077.
- 17:26 Ticket #956 (plos doi prefix is hardcoded) reopened by
- 17:25 Changeset [6078] by
- Up the default timeout for the bitronix transaction manager. * Default …
- 15:52 Ticket #980 (simple search not searching creator, title or abstract) created by
- Simple search should be searching: * abstract ("description") * …
- 13:44 Ticket #956 (plos doi prefix is hardcoded) closed by
- fixed: (In [6077]) Remove hard-coded info:doi/10.1371. Instead configure aliases …
- 13:44 Changeset [6077] by
- Remove hard-coded info:doi/10.1371. Instead configure aliases in …
- 13:37 Changeset [6076] by
- Make use of existing aliases since that is the most common case.
- 13:28 Changeset [6075] by
- To deal with the never ending stream of problems related to configuration …
- 13:24 Changeset [6074] by
- Should of been part of r6073
- 13:13 Changeset [6073] by
- Removed the editAlerts action declaration and the corresponding …
- 12:21 Changeset [6072] by
- Corrected a js inclusion file callout in defaults.xml for the editUser.ftl …
- 10:15 Ticket #979 (display total number of search results) created by
- currently, we don't show the user how many matches there are for their …
- 10:08 Ticket #978 (advanced search - "where my words occur" drop down is ignored.) created by
- howdy! if i select "in the title" from the "where my words occur" input …
- 09:46 Ticket #977 (log rotation is broken after upgrade) created by
- howdy. each time we upgrade ambra, we lose a day of logs. for example, i …
06/25/08:
- 16:24 Changeset [6071] by
- Moved all ambra/dojo javascript inclusion (global_js.ftl) from the html …
- 15:38 Changeset [6070] by
- Minor comment fix.
- 15:08 Changeset [6069] by
- Added function to turn-on debugging for mulgara and remove old ws debug …
- 15:07 Changeset [6068] by
- Removed the since deleted class="trundra" attribute from the body tag. It …
- 14:30 Ticket #969 (Unstyled trailer on slideshow) closed by
- fixed: (In [6067]) bring back global_bottom_footerless and suppress footer on …
- 14:30 Changeset [6067] by
- bring back global_bottom_footerless and suppress footer on …
- 13:37 Changeset [6066] by
- update ad banner code for plosone/biocompare. iframe protects against …
- 12:43 Changeset [6065] by
- Removing max length js constraints when adding comments/corrections to an …
- 12:06 Changeset [6064] by
- adding article type Overview
- 12:01 Changeset [6063] by
- added specific mimetype for mp3. added mp2 to mime.types to match …
- 10:46 Changeset [6062] by
- Reverted changes that crept in as a result of addressing #918 which was …
- 10:39 Ticket #873 (add header separators, line breaks to structured abstract in feed) closed by
- fixed: looks like snape is down, or port 8080 is blocked. sorry for not being …
- 10:09 Ticket #857 (cannot flag an annotation, cannot delete a flagged reply) reopened by
- i deleted the annotation on live, however, i still have the triples on …
- 10:09 Ticket #857 (cannot flag an annotation, cannot delete a flagged reply) closed by
- wontfix
- 09:27 Ticket #973 (can't save a user profile) reopened by
- Still can't save your user preferences in user/secure/editProfile.action. …
06/24/08:
- 21:02 Changeset [6061] by
- * Move session factory out to make it common * Close txn based on random …
- 19:23 Changeset [6060] by
- Changed to local variables to avoid overwriting between threads.
- 19:15 Changeset [6059] by
- Fix more display problems from r5843. Should have been part of r6058.
- 17:52 Changeset [6058] by
- Ensure volume list is displayed in Manage-Virtual-Journals admin page.
- 17:17 Changeset [6057] by
- single action script complete. single action tests for 0.8.2.1 nearly …
- 17:10 Changeset [6056] by
- Fix a bunch of things related to Volumes and Issues. * Removed the …
- 16:50 Changeset [6055] by
- updated supported browser info. Missed these pages with my last commit.
- 16:01 Changeset [6054] by
- Updated supported browsers as per joborder.plos.org issue 6044.
- 14:41 Ticket #976 (IE6: Login page is too wide - missing fixed width) created by
- The login page is rendered too wide in IE6. All other pages are fine so …
- 14:04 Changeset [6053] by
- Fixes user settings page tab display issues for IE6,7
- 11:40 Ticket #975 (add a 'read-only' flag to runitql, to support automated backups) created by
- per ronald's request, i did take a look at groovy/RunItql.groovy. it …
- 09:45 Changeset [6052] by
- *sigh* Session needs to be opened on a per thread basis. Still having …
- 09:42 Changeset [6051] by
- Restored navigation menu functionality for IE which was inadvertantly …
- 01:41 Changeset [6050] by
- Something still is really wrong with this script.
- 00:18 Changeset [6049] by
- Added read queries.
Note: See TracTimeline
for information about the timeline view.
